PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107521001
Common NameGSBRNA2T00107521001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 440aa    MW: 48929.7 Da    PI: 8.0622
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107521001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like292.4e-09275329254
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAt..PktilelmkvkgLtlehvkSHLQkYR 54 
                          +rl Wt +L ++F ea+++LGG   At    ++++lm+  ++t ++++  +Q  R
  GSBRNA2T00107521001 275 TRLFWTDQLKQAFNEAIQSLGGLYSATvtAEQVKKLMEDLDVTESQIANRIQNLR 329
                          69********************9998633789****************9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-8274330IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-7276331IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEEIDRAQTI PEKIAIIQGY LKKLEDGKKE RAEWRKQLEE KANRLQEQRN ALKDQRKAIE  60
DEKKQIEDLK KSDMDDDQKK AIAAQLKAVE DREKLLQSQE NATEDQVKEI EIQEKHAEDA  120
GSAQDAETIL LSTTLQNLVN ASPPLPPPAT TSPTVPSGFL PLTPSNPTAA TSSSGPSTSL  180
RLAPPAPSES SLPAAPTFPR SQTGASSFSS LQPPQQRIMP NPPESYLPRP PQHTSEIVLT  240
SPAFATLPIF PPRNISTQPL LVGPPTVPLG PRNATRLFWT DQLKQAFNEA IQSLGGLYSA  300
TVTAEQVKKL MEDLDVTESQ IANRIQNLRR KKHPRDDDGG EARLLRFWEV RNVKRGGSLS  360
GWICSWWMLT VGTDNLLKFT PLIRTDRFLT MFQATMMQVT ISSSHLLQYR ERLIAGTMFS  420
MSVDVSRCAQ SFRLTSLLC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107521001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325628e-66AC232562.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH054E04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651851.10.0PREDICTED: stress response protein nst1-like
TrEMBLA0A078EDP50.0A0A078EDP5_BRANA; BnaC05g33860D protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2362322
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]